# Overview of Functions¶

This package has three sets of functions starting with either r_, s_ or u_

1. r_ (real data functions): related to analysis of real data. Most users will apply this set of functions to their data.
function.name
r_cluster_data
r_prepare_data
1. s_ (simulation functions): related to the simulations conducted in the paper. There are functions to simulate data, run the analyses on these data, and output performance metrics.
function.name
s_generate_data
s_generate_data_mars
s_mars_clust
s_mars_separate
s_modules
s_pen_clust
s_pen_separate
s_response
s_response_mars
1. u_ (utility functions): functions that are used by both simulation and real data analysis functions. Not really meant to be called by the user.
function.name
u_cluster_similarity
u_extract_selected_earth
u_extract_summary
u_fisherZ